MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF POPULATIONS OF HEMICRICONEMOIDES STRICTATHECATUS ESSER, 1960 AND H. ROSAE RATHOUR, SHARMA, SINGH & GANGULY, 2003 (NEMATODA: CRICONEMATIDAE) FROM COSTA RICA
DOI:
https://doi.org/10.63965/AWYZ5999Abstract
During nematological studies conducted in Costa Rica, five populations of sheathoid nematodes (Hemicriconemoides spp.) were detected in samples collected in Alajuela, Puntarenas, and San José provinces. Morphological and molecular analyses showed that five sheathoid nematode populations from Alajuela and San José provinces match with Hemicriconemoides strictathecatus, a species described from Florida, USA and reported in many other countries. A population from Puntarenas province fit morphologically and molecularly with H. rosae, a species described in Uttar Pradesh, India and also reported in China. This is the first record of the occurrence of these two species in Costa Rica. Phylogenetic analysis of Hemicriconemoides species were performed based on partial sequences of the D2-D3 domains of the 28S ribosomal DNA gene, the ITS1 region and subunit I of the cytochrome c oxidase (COI) mitochondrial gene. This integrative approach also supported the identification of H. strictathecatus and H. rosae as valid species newly recorded in Costa Rica.
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References
Akaike, H. (1973). Information theory and an extension of the maximum likelihood principle. In B. N. Petrov & F. Csaki (Eds.), Second International Symposium on Information Theory (pp. 267–281). Akademiai Kiado.
Ashokkumar, P., & Vadivelu, S. (1991). Occurrence and seasonal variation of Hemicriconemoides mangiferae from tropical and subtropical orchards in Peninsular India. Nematropica, 21(2), 167–176.
Azimi, S., & Pedram, M. (2020). Hemicriconemoides phoenicis Van den Berg et al., 2015 (Nematoda: Criconematidae) from Irán: A morphological and molecular phylogenetic study. Nematology, 22(7), 815–824. https://doi.org/10.1163/15685411-00003342
Barsalote, E.M., Tian, Z., Li, F., & Zheng, J. (2017). Morphological and molecular characterization of Xiphinema krugi from Argentina associated with silk floss tree (Ceiba speciosa) intercepted in China. International Journal of Agriculture and Biology, 19(5), 1131–1136. https://doi.org/10.17957/IJAB/15.0395
Budiman, A. (2020). Morphological and molecular characteristics of Hemicriconemoides cocophillus from the origin of Robusta coffee plantation in Malang, East Java. IOP Conference Series: Earth and Environmental Science, 468, 012014. https://doi.org/10.1088/1755-1315/468/1/012042
Chen, L.-J., & Liu, W.-Z. (2011). Differentiation of Hemicriconemoides mangiferae and H. litchi (Nematoda: Criconematina) based on morphometrics and nuclear ribosomal DNA sequences. Nematology, 13(2), 165–175. https://doi.org/10.1163/138855410X508714
Cherry, T., Szalanski, A. L., Todd, T. C., & Powers, T. O. (1997). The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). Journal of Nematology, 29(1), 23–29.
Chitwood, B. G., & Birchfield, W. (1957). A new genus, Hemicriconemoides (Criconematidae: Tylenchina). Proceedings of the Helminthological Society of Washington, 24, 80–86.
Chitwood, D. J. (2003). Research on plant-parasitic nematode biology conducted by the United States Department of Agriculture–Agricultural Research Service. Pest Management Science, 59(6-7), 748–753. https://doi.org/10.1002/ps.684
Cordero, M. A., Robbins, R. T., & Szalanski, A. L. (2012). Taxonomic and molecular identification of Bakernema, Criconema, Hemicriconemoides, Ogma and Xenocriconemella species (Nematoda: Criconematidae). Journal of Nematology, 44(4), 427–446.
Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012). jModelTest 2: More models, new heuristics, and parallel computing. Nature Methods, 9, 772. https://doi.org/10.1038/nmeth.2109
Dasgupta, M., Raski, D. J., & Gundy, S. D. (1969). Revision of the genus hemicriconemoides chitwood & birchfield, 1957 (Nematoda: Criconematidae). Journal of Nematology, 1(2), 126-145.
De Ley, P., Félix, M. A., Frisse, L. M., Nadler, S. A. Sternberg, P. W., & Thomas, K. (1999). Molecular and morphological characterization of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae). Nematology, 1(6), 591–612.
Eisenback, J. D., & Hunt, D. J. (2020). Handling, fixing, staining and mounting nematodes. In R. N. Perry, D. J. Hunt & S. Subbotin (Eds.), Techniques for work with plant and soil nematodes (pp. 71-87). CABI. https://doi.org/10.1079/9781786391759.0005
Esser, R. P. (1960). Three additional species in the genus Hemicriconemoides Chitwood & Birchfield, 1957 (Nemata: Tylenchida). Nematologica, 5, 64–71.
Gandarilla, H., & Rivas, O. (2012). Primera detección en Cuba de Hemicriconemoides mangiferae. Fitosanidad, 16(2), 95–96.
Gandarilla, H., Rivas, O., & Fernández, E. (2014). Fitonemátodos asociados a los cultivos de frutos tropicales. Fitosanidad, 18(3), 187–197.
Geraert, E. (2010). The Criconematidae of the world: Identification of the family Criconematidae (Nematoda). Academia Press.
Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
Heydari, R., Pourjam, E., & Álvarez-Ortega, S. (2016). First report of the nematodes Filenchus orientalis and Hemicriconemoides californianus on faba bean in Iran. Hellenic Plant Protection Journal, 9(1), 1–7. https://doi.org/10.1515/hppj-2016-0005
Huelsenbeck, J. P. & Ronquist, F. (2001). MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17(8), 754–755.
Inserra, R. N., Stanley, J. D., Ochoa, A., Schubert, T. S., Subbotin, S. A., Crow, W. T., & McSorley, R. (2014). Hemicriconemoides species as crop damaging parasitic nematodes in Florida. Nematology Circular, 223, 1–6.
Jenkins, W. R. (1964). A rapid centrifugal-flotation technique for separating nematodes from soil. Plant Disease Reporter, 48, 692.
Karaca, M., Yavuzaslanoglu, E., Imriz, G., & Sonmezoglu, O. (2020). Molecular characterization of the Pratylenchus vulnus populations on cereals in Turkey. Journal of Nematology, 52 (1), 1–4. https://doi.org/10.21307/jofnem-2020-084
Katoh, K. & Standley, D.M. (2013). MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Molecular Biology and Evolution, 30(4), 772–780. https://doi.org/10.1093/molbev/mst010
Khan, M. R., Phani, V., Chauhan, K., Somvanshi, V. S., Pervez, R., & Walia, R. K. (2019). Redescription and molecular characterisation of Hemicriconemoides rosae Rathour, Sharma, Singh & Ganguly, 2003 from rhizosphere of sugarcane in India. Nematology, 21(7), 767–778. https://doi.org/10.1163/15685411-00003251
López, R., & Salazar, L. (1987). Observaciones sobre la distribución espacial de nematodos fitoparásitos en árboles frutales. Agronomía Costarricense, 11(2), 141–147.
Matthiessen, J. N., & Kirkegaard, J. A. (2006). Biofumigation and enhanced biodegradation: opportunity and challenge in soilborne pest and disease management. Critical Reviews in Plant Sciences, 25(3), 235–265. https://doi.org/10.1080/07352680600611543
Minin, V., Abdo, Z., Joyce, P., & Sullivan, J. (2003). Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology, 52(5), 674–683. https://doi.org/10.1080/10635150390235494
Mirghasemi, N., Fanelli, E., Vovlas, A., Troccoli, A., Jamali, S., & De Luca, F. (2024). First report of Hemicriconemoides kanayaensis (Nematoda: Criconematidae) on tea plantations in Iran. Journal of Nematology, 56(1), 1–14. https://doi.org/10.2478/jofnem-2024-0044
Munawar, M., Cai, R., Castillo, P., & Zheng, J. (2018). Morphological and molecular characterization of Hemicriconemoides paracamelliae sp. n. (Nematoda: Criconematidae) and two known species of Hemicriconemoides from China. Nematology, 20(5), 403–422. https://doi.org/10.1163/15685411-00003147
Munawar, M., Cai, R., Cantalapiedra-Navarrete, C., Castillo, P., & Zheng, J. (2019). Characterisation of two Chinese native Hemicriconemoides species (Nematoda: Criconematidae) with updated descriptions of H. chitwoodi Esser, 1960 and Criconemoides myungsugae Choi & Geraert, 1975. Nematology, 21(2), 181–205. https://doi.org/10.1163/15685411-00003206
Nguyen, T. D., Le, T. M., Nguyen, H., & Trinh, P. (2020). First report of Hemicriconemoides litchi in Vietnam. Journal of Nematology, 52(1), 1–6. https://doi.org/10.21307/jofnem-2020-074
Palomares, J., Cantalapiedra, C., Archidona, A., Vovlas, N., Tzortzakakis, E., & Castillo, P. (2018). Molecular and morphological characterization of the spiral nematode Helicotylenchus oleae Inserra, Vovlas y Golden, 1979 (Nematoda: Hoplolaimidae) in the Mediterranean Basin. European Journal of Plant Pathology, 150, 881–891. https://doi.org/10.1007/s10658-017-1330-6
Phani, V., Khan, M. R., & Dutta, T. K. (2021). Plant-parasitic nematodes as a potential threat to protected agriculture: Current status and management options. Crop Protection, 144, 105573. https://doi.org/10.1016/j.cropro.2021.105573
Powers, T., Bernard, E., Harris, T., Higgins, R., Olson, M., Lodema, M., Mullin, P., & Powers, K. (2014). COI haplotype groups in Mesocriconema (Nematoda: Criconematidae) and their morphospecies associations. Zootaxa, 3827(2), 101–146. https://doi.org/ 10.11646/zootaxa.3827.2.1
Rathour, S., Van den Berg, E., & María, J. L. (2003). Nematodes associated with medicinal plants. Tropical Agriculture, 81, 175–182.
Schumacher, L. A., Grabau, Z. J., Wright, D. L., Small, I. M., & Liao, H.-L. (2022). Effects of grass-based crop rotation, nematicide, and irrigation on the nematode community in cotton. Journal of Nematology, 54(1). https://doi.org/10.2478/jofnem-2022-0046
Schwarz, G. (1978). Estimating the dimension of a model. The Annals of Statistics, 6(2), 461–464.
Seinhorst, J. W. (1959). A rapid method for the transfer of nematodes from fixative to anhydrous Glycerin. Nematologica, 4(1), 67–69.
Sharma, H., & Chaubey, A. K. (2023). Molecular and phenotypic characterisation of Hemicriconemoides rosae (Rathour et al., 2003) from mustard rhizosphere in India. The Journal of Basic and Applied Zoology, 84(16), 1–15. https://doi.org/10.1186/s41936-023-00338-6
Shokoohi, E. (2022). Observation on Hemicriconemoides brachyurus (Loos, 1949) Chitwood & Birchfield, 1957 associated with grass in South Africa. Helminthologia, 59(2), 210–216. https://doi.org/10.2478/helm-2022-0019
Solano, F., Beacham, J., Thomas, S., Steinberger, Y., & Hanson, S. (2013). Assessment of soil nematode biodiversity in preserved soil samples nematodes. Phytopathology, 103(6S), S2.136.
Subbotin, S. A., Vovlas, N., Crozzoli, R., Sturhan, D., Lamberti, F., Moens, M., & Baldwin, J. G. (2005). Phylogeny of Criconematina Siddiqi, 1980 (Nematoda: Tylenchida) based on morphology and D2-D3 expansion segments of the 28S-rRNA gene sequences with application of a secondary structure model. Nematology, 7(6), 927–944. https://doi.org/10.1163/156854105776186307
Van den Berg, E., Tiedt, L. R., Inserra, R. N., Stanley, J. D., Vovlas, N., Palomares-Rius, J. E., Castillo, P., & Subbotin, S. A. (2014). Morphological and molecular characterisation of some Hemicriconemoides species (Nematoda: Criconematidae) with a phylogeny of the genus. Nematology, 16(5), 519–553. https://doi.org/10.1163/15685411-00002786
Van den Berg, E., Tiedt, L. R., Inserra, R. N., Stanley, J. D., Vovlas, N., Palomares-Rius, J. E., Castillo, P., & Subbotin, S. A. (2015). Characterisation of a topotype and other populations of Hemicriconemoides strictathecatus Esser, 1960 (Nematoda: Criconematidae) from Florida with description of H. phoenicis sp. n. from the USA. Nematology, 17(3), 265–300. https://doi.org/10.1163/15685411-00002866
Vásquez, A. (1990). Mapa de suelos de Costa Rica: Leyenda WRB 2007 [Mapa digital, escala 1:200,000]. Asociación Costarricense de la Ciencia del Suelo, FAO, ISRIC-World Soil Information, IUSS.
Vovlas, N., Troccoli, A., & Castillo, P. (2000). Hemicriconemoides macrodorus n. sp. with observations on two other species of the genus (Nematoda: Criconematidae). Nematology, 2(4), 395–405. https://doi.org/10.1163/156854100509259
Vrain, T. C., Wakarchuk, D. A., Levesque, A. C., & Hamilton, R. I. (1992). Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology, 15(6), 563–573.
Zasada, I. A. & Ferris, H. (2004). Nematode suppression with brassicaceous amendments: application based upon glucosinolate profiles. Soil Biology & Biochemistry, 36(7), 1017–1024. https://doi.org/10.1016/j.soilbio.2003.12.014
Zeng, Y., Chen, X., Ni, Y., Zhao, C., Kerns, J., Tredway, L., & Roberts, J. (2022). Morphological and molecular characterization of prevalent plant parasitic nematodes from turfgrasses in Guangdong, China. Horticulturae, 8(7), 611. https://doi.org/10.3390/horticulturae8070611